Biological Energetics

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Biochemistry › Biological Energetics

Questions 1 - 10
1

A biochemist is studying two metabolic reactions at constant temperature and pressure. Reaction 1 is found to have a G value of . Reaction 2 has a G value of . Which statement is true about these reactions?

None of the other answers are true

Reaction 1 proceeds at a faster rate than reaction 2

Reaction 1 proceeds at a slower rate than reaction 2

Reaction 1 and reaction 2 proceed at equally fast rates

Reaction 1 and reaction 2 proceed at equally slow rates

Explanation

The G values given in the question relate to the reactions' thermodynamics. A negative G value means that a reaction is thermodynamically spontaneous. A spontaneous reaction can occur without further energy input. This does not tell us anything about the reaction's rate (kinetics). A spontaneous reaction may be slow or it may be fast.

2

For this reaction, at given reaction conditions.

Which of the following statements concerning the reaction is true?

The mixture contains more products than reactants

The mixture contains more reactants than products

The mixture contains an equal amount of reactants and products

Entropy increases as the reaction proceeds to the left

More than one of these

Explanation

Because for the reaction is negative, it is spontaneous and proceeds favorably to the right. Equilibrium does not occur when the concentrations of reactants and products are equal; it occurs when the rates of forward and reverse reactions are equal. At equilibrium thus there is no net change in the concentration of either the reactants or the products.

3

Regarding formation of double stranded DNA from two complementary single strands, which of the following is true?

The formation of dsDNA is entropically unfavorable, but is enthalpically favorable.

The formation of dsDNA is entropically favorable, but is enthapically unfavorable.

The formation of dsDNA is entropically and enthalpically favorable.

The formation of dsDNA is entropically and enthalpically unfavorable.

None of these

Explanation

If two complementary single strands of DNA are put into a solution, they will spontaneously form dsDNA. This process results in a loss of heat from the system - demonstrating that it is an enthalpically favorable process. However, it is entropically unfavorable given the formation of a more ordered structure.

4

What is reaction coupling?

Driving an unfavorable reaction forward by pairing it with a very favorable reaction

Stopping a favorable reaction from occurring by pairing it with an unfavorable reaction

Combining two reactions in order to double the amount of product that will be created

Pairing two reactions together in order to alter their chemical equilibriums

Pairing two unfavorable reactions together so that they both become favorable

Explanation

Reaction coupling is the pairing of one unfavorable reaction to another reaction that is favorable. The energetics of the favorable reaction drive the unfavorable one forward.

5

The standard free energy change for any chemical reaction becomes less favorable when __________.

increases and decreases

temperature increases

decreases and increases

decreases and decreases.

increases and increases.

Explanation

The Gibbs free energy becomes less favorable, or more positive, as enthalpy increases and entropy decreases.

6

Consider the hydrolysis of a molecule of ATP, as shown by the reaction below:

If the pH of the solution in which this reaction is occurring were to be lowered, what effect would this have on the above reaction?

The reaction will be pushed to the left

The reaction will be pushed to the right

A change in pH will have no effect on the reaction

The equilibrium constant of the reaction will increase

The equilibrium constant of the reaction will decrease

Explanation

This question is asking us to determine what effect a pH change would have on the reaction in which ATP is hydrolyzed into ADP. First, we have to realize that if pH were lowered, that means we are dealing with a more acidic solution. A more acidic solution, in turn, means that we have an increased concentration of . So, in essence, the question is asking what effect an increased concentration will have on the reaction. In the reaction, we can see that is on the product side of the reaction (on the right side). Therefore, if we drive the concentration up, the reaction will be pushed toward the left according to Le Chatelier's principle. Furthermore, it's important to note that changing the concentration of any of the reactants or products will not have an effect on the equilibrium constant, . In fact, it is precisely because the equilibrium constant doesn't change that the reaction will shift to the left, so that the constant will remain just that, constant. Moreover, the only thing that can change an equilibrium constant is the temperature at which the reaction takes place.

7

The high energy found in a molecule of adenosine triphosphate (ATP) is stored mostly in which type of bond?

Phosphoanhydride

Phosphoester

Amide

Glycosidic

Explanation

Phosphoanhydride bonds contain lots of stored energy, with a of . This energy, when released during ATP hydrolysis, can then be used for various anabolic pathways.

8

Why is polymerization of nucleoside triphosphates thermodynamically favorable?

During the polymerization, pyrophosphate is released and hydrolyzed driving the reaction forward.

During the polymerization, one phosphate group is released and this drives the reaction forward.

The polymerization is coupled to ATP hydrolysis.

During the polymerization, ATP is released from the nucleoside when the base is attached which, because it is creating energy, is favorable.

The polymerization of nucleoside triphosphates is not thermodynamically favorable, but it is kinetically favorable.

Explanation

A nucleoside triphosphate - as its name suggests - is a DNA base with three phosphate groups. During polymerization, these base groups will be continuously connected to each other in order to form a DNA strand. This is thermodynamically favorable because during the polymerization, two of the three phosphate groups on the nucleoside triphosphate will detach as a pyrophosphate. This will then be hydrolyzed which is extremely thermodynamically favorable. And so, the polymerization itself is considered to be thermodynamically favorable.

9

Which of the following types of transport require ATP to function?

I. Diffusion

II. Facilitated diffusion

III. Primary active transport

IV. Secondary active transport

III and IV

III only

I, II, III, and IV

II, III, and IV

I and II

Explanation

Diffusion and facilitated diffusion are methods by which molecules can pass through membranes without the use of ATP. Even though facilitated diffusion does require a channel to function, movement is still controlled by differences in concentration gradients. Primary active transport uses ATP directly to drive molecules against their concentration gradients, and secondary active transport uses the pre-established electrochemical gradient from primary transport to create movement for other molecules - so it still does require ATP to function even though it is indirect.

10

Some reactions that occur within cells have a large, positive standard free energy change. How is it that these reactions are able to occur, given that they are so energetically unfavorable?

All of these are true

These reactions are coupled with highly exergonic reactions

The conditions found within cells are different than standard conditions

Oftentimes, the product of an endergonic reaction is readily used up in another reaction, thus keeping the concentration of product in the endergonic reaction low

Explanation

All of the answer choices given in this question are true statements, and they are all reasons why endergonic reactions can occur within living things.

Oftentimes, reactions that require a large input of energy are thermodynamically coupled to the hydrolysis of ATP, the energy currency of the cell. As a result, ATP is able to provide the fuel, so to speak, for powering the reaction.

Also, it's important to note that standard free energy changes are much different than the free energy changes that occur under physiological conditions. Standard state assumes that all reactants and all products of a reaction start out at a concentration of , but this concentration is absurdly high for just about any compound found within cells.

Lastly, the products of some endergonic reactions are often used up quite readily. As a result of this, the concentration of product is kept at a low level, which means that the reactions becomes favored toward making more product.

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