Quaternary Structure

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Biochemistry › Quaternary Structure

Questions 1 - 9
1

Which of the following best explains a quaternary structure of a protein?

Hydrogen and disulfide bonds, two or more polypeptide chains

Hydrogen bonds, alpha-helices and beta-pleated sheets

Linear sequence of amino acids

Disulfide bonds, single polypeptide chain

Collagen and myoglobin

Explanation

Primary structure: linear sequence of amino acids

Secondary structure: hydrogen bonds, alpha-helices and beta-pleated sheets

Tertiary structure: disulfide bonds, single polypeptide chain

Myoglobin is a monomer, and is made of a single polypeptide chain. Thus, its highest level of protein structure is tertiary. While collagen does contain different polypeptide chains, it is an example of a protein with quaternary structure, not an explanation of what this means.

2

Which of the following best describes the quaternary structure of a protein?

How the polypeptide chains fit together

The layout of alpha-helices and beta-sheets

The polypeptide chain's complete 3-D structure

The sequence of nucleic acids

The four parts of a protein's amino acid sequence

Explanation

Quaternary structure describes how polypeptide chains fit together to form a complete protein. Quaternary protein structure is held together by hydrophobic interactions, and disulfide bridges. The sequence of amino acids is known as primary structure; helices, sheets, and similar features are part of the secondary structure; and the 3-D organization is tertiary structure. "The four parts of a protein's amino acid sequence" does not refer to anything in particular.

3

What form of protein structure includes disulfide bonds?

Tertiary and quaternary structures

Only primary structure

Only secondary structure

Only tertiary structure

Only quaternary structure

Explanation

In this question, we're asked about how disulfide bonds relate to protein folding. Let's go through each form of structure.

Primary structure refers to the sequence of amino acids in the polypeptide, from the N-terminal end to the C-terminal end.

Secondary structure refers to local conformations of protein folding. There are a number of commonly found motifs that have been recognized, such as alpha-helices and beta-pleated sheets. These motifs are stabilized by intermolecular interactions between amino acid side-chains and also between alpha-carboxy and alpha-amino groups of the peptide backbone. Some of these intermolecular interactions include hydrogen bonding, van der Waals interactions, dipole interactions, and ionic bonding.

Tertiary structure refers to the overall three-dimensional structure of the folded polypeptide. This form of structure relies on the same intermolecular interactions found in secondary structure. In addition, tertiary structure also includes disulfide bonds that are found between cysteine residues.

Quaternary structure refers only to proteins that are composed of multiple polypeptides. These separate polypeptides are held together by the same intermolecular forces found in secondary and tertiary structures. In addition, disulfide bonds are also found in quaternary structure, just like in tertiary structure.

Thus, tertiary and quaternary structure both include disulfide bonds.

4

What is the primary driver of protein folding on a macro level?

Entropic force

Van der Waals forces

Covalent bonding

Ionic bonding

Hydrogen bonding

Explanation

While covalent bonds create the primary structure of a protein, and hydrogen bonding and Van der Waals forces have a large impact on the secondary structure of a protein, they are not the main contributors to overall folding of a protein. This has more to do with solvation costs, hydrophobicity, and entropy. The hydrophobicity and hydrophobic portions of the protein must fold to minimize entropic costs.

5

Which of the following is true about quaternary structure?

When ligands bind to proteins, their 3D-structures sometimes change

A protein with multiple identical subunits does not have a quaternary structure.

The main forces holding together oligomeric subunits are disulfide bonds

None of these

Explanation

A protein with multiple identical subunits does indeed have a quaternary structure; in these cases, dimers and tetramers are common. The main forces holding together oligomeric subunits are weak, non-covalent interactions, specifically, hydrophobic ones, as well as electrostatic forces. Subunits do not necessarily form separate domains within a protein; in a potassium channel protein, for example, there are identical subunits which come together to form the single channel. Proteins’ 3D-structures do indeed sometimes change when ligands bind; this change help regulate the proteins’ biological activity.

6

Hemoglobin is a protein that possesses more than one polypeptide subunit, therefore it has a __________ structure.

quaternary

tertiary

secondary

primary

complex

Explanation

Hemoglobin is a tetramer that possesses a quaternary structure containing multiple folded polypeptide structures (tertiary structures). A tertiary protein will commonly contain a single polypeptide chain with one or more secondary structures.

7

Which of the following statements is true about proteins with quaternary structures?

I. Proteins are composed of multiple polypeptide chains.

II. Proteins are composed of subunits that interact through weak forces (noncovalent) only.

III. Sub-units may work cooperatively,one sub-unit binding to a molecule increases the affinity of the other sub-units for the same ligand.

IV. Hemoglobin is a protein displaying a quaternary structure composed of 4 sub-units.

I, III, and IV

I and II

III and IV

I, II, III, and IV

II and III

Explanation

Hemoglobin is a classic example of protein with a quaternary structure. The binding of oxygen to one sub unit increases the affinity of the other sub units for oxygen (cooperativity). Adult hemoglobin is made of two alpha globin and two beta globin polypeptides. Protein quaternary structure may involve both noncovalent and covalent forces.

8

Which of the following proteins do not have quaternary structure?

Myoglobin

Hemoglobin

p53

DNA polymerase

Explanation

Quaternary structure of a protein involves the assembly of subunits. Hemoglobin, p53 and DNA polymerase are all composed of subunits, while myoglobin is a functional single sequence. Since myoglobin does not have multiple subunits, it does not have quaternary structure.

9

Which of these macromolecules has quarternary structure?

Hemoglobin

Myoglobin

Chymotrypsin

Sucrose

Lactose

Explanation

Hemoglobin is the only available example of a macromolecule composed of multiple subunits. Hemoglobin has frou subunits, each capable of binding and transporting one molecule of oxygen in the blood.

Chymotrypsin and myogblobin are both simple proteins, each consisting of a single polypeptide. These proteins do not have multiple subunits; thus their highest level of structure is tertiary (three-dimensional). Lactose and sucrose are disaccharides, each composed of two carbohydrate monomers (monosaccharides).

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