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Example Questions
Example Question #26 : Identifying Specific Protein Structures
Disulfide bonds are most important in which level of protein structure?
Quaternary structure
Tertiary structure
Secondary structure
Two of these
Primary structure
Two of these
Disulfide bonds are involved in the tertiary and quaternary structure of proteins, not the other structural levels. Primary structure consists of the amino acid sequence. Secondary structure consists of alpha helices and beta pleated sheets. Tertiary structure consists of bonds between hydrogen bonds between R-groups, nonpolar interactions, electrostatic interactions, and covalent bonds including disulfide bonds. Quaternary structure involves the arrangement of more than one polypeptide into a protein complex, and involves the same bonds as those in tertiary structure.
Example Question #27 : Identifying Specific Protein Structures
Which of the following sets of amino acids is most likely to be found on the interior portion of a transmembrane protein?
Aspartate, isoleucine, and serine
Valine, leucine, and alanine
Glutamate, tryptophan, and histidine
Tyrosine, asparagine, and glycine
Glycine, lysine, and histidine
Valine, leucine, and alanine
The interior portion of a transmembrane protein is most likely to be populated with smaller, hydrophobic amino acids. This is because the interior of the transmembrane protein is in the hydrophobic environment of the lipid bilayer. Thus, alanine, valine, and leucine - small, hydrophobic amino acids - are most likely to be found there.
Example Question #63 : Identification By Structure
The secondary structure of protein formation is governed by what type of bonds?
Covalent bonds
Peptide bonds
Ionic bonds
Hydrogen bonds
van der Waals forces
Hydrogen bonds
The secondary structure of a protein can be either an alpha helix or a beta pleated sheet. In either case, the structure forms due to intra-chain hydrogen bonding of the protein's backbone amino and carboxyl groups.
Example Question #29 : Identifying Specific Protein Structures
Glycation, otherwise known as non-enzymatic glycosylation, is a process that creates glycoproteins. How is this accomplished?
Secretion of sugars into an extracellular matrix composed predominately of polypeptides and proteins
Via kinases, predominantly in the liver
Attachment of amino acid monomers to carbohydrates
The synthesis of alternating carbohydrate and amino acid monomers, forming a "hydrid" compound that is somewhere between a polysaccharide and a polypeptide
Attachment of sugar monomers to polypeptides
Attachment of sugar monomers to polypeptides
For this question, we're being asked the basics of how sugars can combine with proteins to create glycoproteins.
For starters, it's important to distinguish between glycoproteins and proteoglycans. Both of these are compounds that consist of carbohydrate and protein. The difference, however, is in the relative amounts of each. Glycoproteins are predominately protein, whereas proteoglycans are predominately carbohydrate.
Another important distinction is the difference between glycation and glycosylation. Both of these processes involve the addition of a sugar to a protein or polypeptide. In glycation, however, the process occurs on its own without the help of any enzymes. Glycosylation, on the other hand, is assisted by enzymes.
Generally speaking, reducing sugars that are capable of equilibrating between a closed chain form and an open chain form are able to add to polypeptides via glycation.
In fact, clinicians take advantage of this fact for more accurately diagnosing individuals with diabetes. This is because glucose in the bloodstream is able to naturally attach to proteins found within the blood, such as hemoglobin, via glycation. When glucose levels have been elevated for an extended period of time, as is the case in someone with diabetes, there will also tend to be elevated levels of glycated hemoglobin, otherwise known as hemoglobin A1C.
Example Question #28 : Identifying Specific Protein Structures
Which of the following is not present on all amino acids?
All of these are present on every amino acid
Carboxyl group
Amino group
Hydrogen
R-group
All of these are present on every amino acid
All 20 of the amino acids have on its central carbon a hydrogen, a carboxyl group, an amino group, and a distinctive R-group. These R-groups determine the properties of the amino acid and thus the polypeptide of which they are a part.
Example Question #121 : Identifying Biochemical Molecules
Primary protein structure is primarily held together by what type of bond?
Hydrogen bond
Phosphodiester bond
Ionic bond
Peptide bond
Van der waals interactions
Peptide bond
Primary protein structures are composed of amino acids linked together by peptide bonds. Secondary protein structures are held together by hydrogen bonds. Phosphodiester bonds can be found between sugar and phosphate groups in the backbone of DNA.
Example Question #331 : Biochemistry
Why is the tertiary structure of a protein always conserved, even more so than the primary structure?
The primary structure is more conserved than the tertiary structure
The bonds holding the tertiary structure are stronger than those of the primary structure
Tertiary structure is more closely associated with the sequence of the protein
The primary and tertiary structure of a protein are equally conserved
Tertiary structure is more closely associated with the protein's function
Tertiary structure is more closely associated with the protein's function
The primary structure of a protein deals with its sequence while the tertiary structure deals with the folding of the protein. The folding of the protein is what determines its function, and because this is important in maintaining the life of organisms, the tertiary structure must be heavily conserved.
Example Question #123 : Identifying Biochemical Molecules
Which of these are negatively charged amino acids at pH 7?
I. Aspartic acid
II. Glutamic acid
III. Lysine
IV. Arginine
IV only
III and IV
I, III, and IV
I, II, and III
I and II
I and II
Amino acids are classified based on their charged (polar groups) at neutral pH (pH=7).Lysine (Lys, K), arginine (Arg, R) and histidine (His, H) are positively charged at neutral ph (pH=7), while aspartate and glutamate are negatively charged.
Example Question #1 : Identifying Specific Nucleic Acid Structures
Identify the nucleobase.
Thymine
Guanine
Cytosine
Adenine
Uracil
Guanine
The structure represents guanine because of the characteristic carbonyl group at carbon 6 and amine group and carbon 2.
Example Question #2 : Identifying Specific Nucleic Acid Structures
Identify the nucleobase.
Uracil
Cytosine
Thymine
Guanine
Adenine
Adenine
The structure is adenine because of the characteristic amine group on carbon 6 and lack of any other substituents.
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