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Example Questions
Example Question #21 : Dna, Rna, And Proteins
Although there are about 30,000 genes in the human body, approximately 120,000 proteins can be created in the body. This is caused by __________.
the addition of a poly A tail to the primary transcript
the degeneracy fo the genetic code
the polycistronic transcription mechanism found in humans
the variable splicing of exons from pre-mRNA
the variable splicing of exons from pre-mRNA
The primary transcript (immediately following transcription) is composed of multiple segments of RNA called introns and exons. While introns are always cleaved from the primary transcript, the exons may or may not stay on the primary transcript, which will eventually be translated. Since different numbers and orders of exons can arise from the same transcript, there are multiple proteins that can possibly be made from one primary transcript.
Intron and exon splicing, the addition of the 5' cap, and the addition of the poly A tail are all crucial post-transcriptional modifications in eukaryotes, but only the alternative splicing patterns result in variable transcripts. Eukaryotes do not follow the polycistronic model, in which one mRNA will code for multiple genes or proteins. The degeneracy of the genetic code refers to the multiple codons that will produce the same amino acids; this feature increases the variability of the DNA sequence, but does not affect the number of possible transcripts, genes, or proteins formed.
Example Question #1201 : Mcat Biological Sciences
What is the purpose of the poly A tail attached to the primary transcript prior to translation?
It protects the transcript from degradation
It gives the ribosome a site to begin translation
It signals the ribosome to terminate translation
It signals the mRNA where to travel in order to be translated
It protects the transcript from degradation
The poly A tail is an example of post-transcriptional processing. The poly A tail is attached to the end of the transcript, and protects it from being degraded by exonucleases. Exonucleases are essential in order to recycle the nucleobases used in mRNA, but can be harmful to RNA that has not yet been translated unless the poly A tail is present.
Example Question #22 : Dna, Rna, And Proteins
What is a common modification that occurs on histone tails to modulate gene expression?
Acetylation
Hydroxylation
Sumoylation
Ubiquitination
Acetylation
Both acetylation and methylation of histone tails modulate expression of target genes. Acetylation is always associated with active transcription while, in most cases, methylation is associated with repression of target genes. Acetylation generally loosens the DNA-histone association, allowing for transcription. In contrast, methylation generally tightens this association, blocking transcription proteins from binding to the DNA.
Hydroxylation is used to modify proteins and activate steroid hormones. Ubiquitination and sumoylation are post-translation protein modifications.
Example Question #1202 : Mcat Biological Sciences
Which of the following experimental methods cannot be used to measure the relative abundance of a particular mRNA?
Microarray
Western blot
Northern blot
Reverse transcription polymerase chain reaction (rt-PCR)
Western blot
Western blots are used to measure the relative abundance of proteins. While there is a correlation between the amount of mRNA and protein, using a western blot to measure mRNA would be inconclusive due to the variability of protein half life.
Northern blots are used to run mRNA samples on gels, DNA microarrys give the expression levels of certain genes, and rtPCR is used to detect RNA expression levels. Any of these methods could provide the relative abundance of a particular mRNA.
Example Question #22 : Dna, Rna, And Proteins
Three isoforms of a particular protein (variants A, B, and C) are expressed. In the following diagram, exons are indicating by boxes, introns by the black lines, and splice junctions by blue lines. Assume each exon is greater than 500 bp in length (figure not drawn to scale).
In the absence of available antibodies for Western blotting, how would one experimentally determine if variant C was expressed in HeLa cells?
Quantitative real time PCR using primers to amplify exon 2
Quantitative real time PCR using primers to amplify exon 1
Quantitative real time PCR using primers designed to amplify a region from the 3' end of exon 4 to the 5' end of exon 7
Quantitative real time PCR using primers to amplify exon 6
Quantitative real time PCR using primers designed to amplify a region from the 3' end of exon 1 to the 5' end of exon 2
Quantitative real time PCR using primers designed to amplify a region from the 3' end of exon 4 to the 5' end of exon 7
Although each splice variant contains exons 4 and 7, PCR products between these exons in variants A and B would be too large to be detected using real time PCR; therefore, amplifying that region would conclusively identify the presence of variant C in HeLa cells. If variant C is not expressed in HeLa cells, one would expect a negative (or unamplified) result using real time PCR.
Variant A expression: 1, 2, 3, 4, 5, 6, 7
Variant B expression: 1, 3, 4, 6, 7
Variant C expression: 1, 2, 4, 7
By amplifying exons 5 and 6, and looking for a negative result, we can identify the presence of variant C.
Example Question #1 : Translation
Which of the following cell organelles is responsible for making proteins?
Ribosomes
Lysosomes
Golgi apparatus
Endoplasmic reticulum
Ribosomes
Ribisomes are the protein creators within the cell. Ribisomes use a process called translation (via the use of mRNA) to form proteins.
The Golgi apparatus and rough endoplasmic reticulum are involved in protein modification and packaging. Lysosomes are involved in detoxification.
Example Question #2 : Translation
Protein is translated from __________ transcripts.
DNA
mRNA
ribosomes
tRNA
other proteins
mRNA
DNA is transcribed into pre-mRNA in the nucleus. To leave the nucleus, the pre-mRNA undergoes modification to remove introns, add a poly-A tail, and add a 5' cap. When modification is complete, the chain is a mature mRNA that is capable of exiting the nucleus. Upon leaving the nucleus, the mRNA is bound to a ribosome for translation into protein product.
Ribosomes are largely comprised of rRNA. tRNA is used during the translation process to transport amino acids through the cytoplasm for addition onto the growing amino acid chain in the ribosome.
Example Question #1211 : Mcat Biological Sciences
Prions are the suspected cause of a wide variety of neurodegenerative diseases in mammals. According to prevailing theory, prions are infectious particles made only of protein and found in high concentrations in the brains of infected animals. All mammals produce normal prion protein, PrPC, a transmembrane protein whose function remains unclear.
Infectious prions, PrPRes, induce conformational changes in the existing PrPC proteins according to the following reaction:
PrPC + PrPRes → PrPRes + PrPRes
The PrPRes is then suspected to accumulate in the nervous tissue of infected patients and cause disease. This model of transmission generates replicated proteins, but does so bypassing the standard model of the central dogma of molecular biology. Transcription and translation apparently do not play a role in this replication process.
This theory is a major departure from previously established biological dogma. A scientist decides to test the protein-only theory of prion propagation. He establishes his experiment as follows:
Homogenized brain matter of infected rabbits is injected into the brains of healthy rabbits, as per the following table:
Rabbit 1 and 2: injected with normal saline on days 1 and 2
The above trials serve as controls.
Rabbit 3 and 4: injected with homogenized brain matter on days 1 and 2
The above trials use unmodified brain matter.
Rabbit 5 and 6: injected with irradiated homogenized brain matter on days 1 and 2
The above trials use brain matter that has been irradiated to destroy nucleic acids in the homogenate.
Rabbit 7 and 8: injected with protein-free centrifuged homogenized brain matter on days 1 and 2
The above trials use brain matter that has been centrifuged to generate a protein-free homogenate and a protein-rich homogenate based on molecular weight.
Rabbit 9 and 10: injected with boiled homogenized brain matter on days 1 and 2
The above trials use brain matter that have been boiled to destroy any bacterial contaminants in the homogenate.
Which intermediates of the central dogma of molecular biology below are present in normal cellular replication, but apparently absent in the above model of prion replication?
I. mRNA
II. tRNA
III. Protein
I, only
I and II
I and III
II, only
I, II, and III
I and II
The above reaction shows an actual transfer of information. The information contaiend in the specific structure of PrPC is converted to that contained in PrPRes; in other words, PrPRes is effectively replicating. In all other forms of cellular replication, based on the central dogma of molecular biology, replication occurs based on the following pattern:
Parental DNA → mRNA → Protein, carried by tRNA
Example Question #1212 : Mcat Biological Sciences
Prions are the suspected cause of a wide variety of neurodegenerative diseases in mammals. According to prevailing theory, prions are infectious particles made only of protein and found in high concentrations in the brains of infected animals. All mammals produce normal prion protein, PrPC, a transmembrane protein whose function remains unclear.
Infectious prions, PrPRes, induce conformational changes in the existing PrPC proteins according to the following reaction:
PrPC + PrPRes → PrPRes + PrPRes
The PrPRes is then suspected to accumulate in the nervous tissue of infected patients and cause disease. This model of transmission generates replicated proteins, but does so bypassing the standard model of the central dogma of molecular biology. Transcription and translation apparently do not play a role in this replication process.
This theory is a major departure from previously established biological dogma. A scientist decides to test the protein-only theory of prion propagation. He establishes his experiment as follows:
Homogenized brain matter of infected rabbits is injected into the brains of healthy rabbits, as per the following table:
Rabbit 1 and 2: injected with normal saline on days 1 and 2
The above trials serve as controls.
Rabbit 3 and 4: injected with homogenized brain matter on days 1 and 2
The above trials use unmodified brain matter.
Rabbit 5 and 6: injected with irradiated homogenized brain matter on days 1 and 2
The above trials use brain matter that has been irradiated to destroy nucleic acids in the homogenate.
Rabbit 7 and 8: injected with protein-free centrifuged homogenized brain matter on days 1 and 2
The above trials use brain matter that has been centrifuged to generate a protein-free homogenate and a protein-rich homogenate based on molecular weight.
Rabbit 9 and 10: injected with boiled homogenized brain matter on days 1 and 2
The above trials use brain matter that have been boiled to destroy any bacterial contaminants in the homogenate.
Which of the following findings would most strongly refute the protein-transmission hypothesis of prion propagation?
Transmission in the control and transmission in Rabbits 7 and 8
No transmission in the control and transmission in Rabbits 9 and 10
Transmission in the control and transmission in Rabbits 9 and 10
No transmission the control and transmission in Rabbits 5 and 6
Transmission in the control and transmission in Rabbits 5 and 6
Transmission in the control and transmission in Rabbits 7 and 8
Transmission in the control and a transmission in those rabbits injected with protein free homogenate would refute the above model. A protein-free homogenate would only be able to transmit disease via nucleic acids.
Example Question #1 : Translation
Cryptosporidium is a genus of gastrointestinal parasite that infects the intestinal epithelium of mammals. Cryptosporidium is water-borne, and is an apicomplexan parasite. This phylum also includes Plasmodium, Babesia, and Toxoplasma.
Apicomplexans are unique due to their apicoplast, an apical organelle that helps penetrate mammalian epithelium. In the case of cryptosporidium, there is an interaction between the surface proteins of mammalian epithelial tissue and those of the apical portion of the cryptosporidium infective stage, or oocyst. A scientist is conducting an experiment to test the hypothesis that the oocyst secretes a peptide compound that neutralizes intestinal defense cells. These defense cells are resident in the intestinal epithelium, and defend the tissue by phagocytizing the oocysts.
She sets up the following experiment:
As the neutralizing compound was believed to be secreted by the oocyst, the scientist collected oocysts onto growth media. The oocysts were grown among intestinal epithelial cells, and then the media was collected. The media was then added to another plate where Toxoplasma gondii was growing with intestinal epithelial cells. A second plate of Toxoplasma gondii was grown with the same type of intestinal epithelium, but no oocyst-sourced media was added.
The scientist in the passage develops an effective treatment for cryptosporidium infection. The treatment exploits a difference in the rRNA structure between cryptosporidium and its human hosts. In which organelle is this difference most likely to directly manifest?
Peroxisomes
Cell membrame
Smooth endoplasmic reticulum
Golgi body
Ribosomes
Ribosomes
Ribosomes have rRNA as a critical component, and assisting in protein synthesis is the major role for rRNA in eukaryotic cells.
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